Thanks for the quick reply LG77 - I can see that from the older version, thats the picture above, but I can find the option to set GPIO-18 on the newer version 2.0.0-alpha.10.1.
If I click the display Live visualization that is working, but nothing is being outputted to the LED's ever if I reboot it used to display Pacman at boot, which I have set, but still nothing, I must be missing something.